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Author	SHA1	Message	Date
James Fellows Yates	e39c6a8ccb	Fix MALT multiqc report clash	2022-03-03 18:04:03 +01:00
James Fellows Yates	2c183ed2ed	Add Kraken2 and MALT/run as Proof of Concept (currnetly MQC issue)	2022-03-03 17:42:02 +01:00
James Fellows Yates	278f5605ca	Added database preparation and final channel for profiling	2022-02-19 12:36:08 +01:00
James Fellows Yates	cf55cc592c	Get skeleton read processing to input for profiling	2022-02-18 16:51:01 +01:00
maxibor	1b893cb039	add check for fastq with fasta	2022-02-18 13:27:10 +01:00
maxibor	a6cfa0a1ba	cleanup	2022-02-18 13:15:30 +01:00
maxibor	54a1a4fd45	update samplesheet specs	2022-02-18 13:11:18 +01:00
maxibor	1aba3ed01c	Merge remote-tracking branch 'origin/dev' into dev	2022-02-18 11:53:52 +01:00
maxibor	f867c057a4	add more columns to samplesheet	2022-02-18 11:53:13 +01:00
James A. Fellows Yates	c68afbbf90	Update nextflow.config	2022-02-18 08:45:06 +01:00
James Fellows Yates	7321daf4f6	Update README with approximate pipeline outline	2022-02-18 08:41:34 +01:00
James Fellows Yates	12e7b428f2	initial template build from nf-core/tools, version 2.2	2022-02-18 07:55:14 +01:00