millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-29 13:29:54 +00:00
Code Issues Releases Packages Activity
520 commits 7 branches 0 tags 7.5 MiB
Commit graph

43 commits

Author SHA1 Message Date
James A. Fellows Yates
4f27998852
Update usage.md 2022-10-14 14:37:52 +02:00
Sofia Stamouli
2423c9d87c
Add headers 2022-10-11 15:02:01 +02:00
Moritz E. Beber
fdb8a7f740 Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 12:21:54 +02:00
nf-core-bot
51bacb00e6 Template update for nf-core/tools version 2.6 2022-10-05 03:30:53 +00:00
Rafal Stepien
768f9980d8 Add pep_input_base_dir to workflow. Just need to update modules 2022-09-15 12:31:49 -04:00
Rafal Stepien
5f3eee9a4a Add working version of PEP-nf-core integration 2022-09-14 14:28:48 -04:00
Sofia Stamouli
ded6d7ab1f
Update docs/usage.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-09-13 18:13:00 +02:00
Sofia Stamouli
0072c29a6f
Update docs/usage.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-09-13 18:12:14 +02:00
Sofia Stamouli
c664508240
Update usage.md 2022-09-13 15:56:06 +02:00
James Fellows Yates
3eb136ec3c Merge branch 'dev' into json-schema 2022-08-31 12:55:49 +02:00
James A. Fellows Yates
28d8d3f8fb
Merge branch 'dev' into nf-core-template-merge-2.5 2022-08-31 09:16:34 +02:00
James Fellows Yates
0107330d92 Clarify specifying output parameters in database db_params column 2022-08-31 08:34:57 +02:00
James Fellows Yates
bdcae4f934 More docs and tweat to usage.md 2022-08-30 16:04:05 +02:00
nf-core-bot
6dfca81761 Template update for nf-core/tools version 2.5 2022-08-30 13:43:03 +00:00
James A. Fellows Yates
26e31c782d
Merge branch 'dev' into motus 2022-07-04 13:14:42 +02:00
James Fellows Yates
4552b53e75 Add note about MALT version to docs 2022-06-20 08:30:23 +02:00
James Fellows Yates
6c6f5e0913 Merge branch 'dev' of github.com:nf-core/taxprofiler into dev 2022-06-09 08:21:51 +02:00
James Fellows Yates
ec13b8d608 Remove support for uncompressed FASTQ files 2022-06-09 08:21:48 +02:00
James A. Fellows Yates
dc48935651
Apply suggestions from code review 2022-06-07 20:19:45 +02:00
JIANHONG OU
c8a59adbce remove the database auto-download for mOTUs. 2022-06-03 14:13:58 -04:00
James A. Fellows Yates
53c4399052
Merge branch 'dev' into motus 2022-06-02 21:38:35 +02:00
JIANHONG OU
4d77b47e8d create a new test profile config for mOTUs. 2022-05-31 08:47:38 -04:00
James Fellows Yates
310ac6b450 Merge branch 'dev' of github.com:nf-core/taxprofiler into add-filtlong 2022-05-31 13:05:52 +02:00
James A. Fellows Yates
d67543503b
Apply suggestions from code review 
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
 2022-05-07 13:15:21 +02:00
James Fellows Yates
47a5ae0cff Add FASTP complexity option 2022-05-07 06:09:05 +02:00
Lauri Mesilaakso
02517733aa
Update docs/usage.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 10:40:59 +02:00
ljmesi
6618e8cac6 Change param to a more generic name 2022-05-05 13:20:34 +02:00
ljmesi
557d31dfd2 Add parameter for turning on longread host removal 2022-05-05 13:19:10 +02:00
James Fellows Yates
031cb45934 Add initial longread QC filtering - requires filtlong module update 2022-05-01 07:18:14 +02:00
James Fellows Yates
a4a9b161d8 Lintin 2022-04-29 22:02:44 +02:00
James Fellows Yates
8126d16dee Add draft version of DIAMOND 2022-04-29 21:59:42 +02:00
Sofia Stamouli
236141f065 Resolve conflicts with dev 2022-04-20 10:17:10 +02:00
James A. Fellows Yates
ac714dd30f
Apply suggestions from code review 
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
 2022-04-20 09:22:10 +02:00
sofstam
1b7ff2265d Update usage.md, reformat test.config and modules.config 2022-04-19 13:04:58 +02:00
James Fellows Yates
457c13e8b7 Add additional tips for host removal 2022-04-17 17:55:23 +02:00
James Fellows Yates
818d3bd053 Complete documentation for preprocessing subworkflows 2022-04-17 17:53:22 +02:00
James A. Fellows Yates
b8b11fd065
Apply suggestions from code review 
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
 2022-04-11 10:30:29 +02:00
James Fellows Yates
b892fd0be5 Initial attempt at docs 2022-04-10 22:17:44 +02:00
James A. Fellows Yates
edce6603ef
Merge branch 'dev' into nf-core-template-merge-2.3.2 2022-03-24 14:10:58 +01:00
nf-core-bot
6b939e6728 Template update for nf-core/tools version 2.3.1 2022-03-23 13:57:56 +00:00
ljmesi
2e1b6c5d0a Add info on Nanopore reads to fastq_1 column 2022-03-18 11:00:36 +01:00
nf-core-bot
699d26b149 Template update for nf-core/tools version 2.3 2022-03-15 21:05:37 +00:00
James Fellows Yates
12e7b428f2 initial template build from nf-core/tools, version 2.2 2022-02-18 07:55:14 +01:00