{ "name": "nf-core/taxprofiler", "homePage": "https://github.com/nf-core/taxprofiler", "repos": { "https://github.com/nf-core/modules.git": { "modules": { "nf-core": { "adapterremoval": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "bbmap/bbduk": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "bowtie2/align": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "bowtie2/build": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "bracken/bracken": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "cat/fastq": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "centrifuge/centrifuge": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "centrifuge/kreport": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "custom/dumpsoftwareversions": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "diamond/blastx": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "eido/convert": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "eido/validate": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "falco": { "branch": "master", "git_sha": "fc959214036403ad83efe7a41d43d0606c445cda" }, "fastp": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "fastqc": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "filtlong": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "gunzip": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "kaiju/kaiju": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "kaiju/kaiju2krona": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "kaiju/kaiju2table": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "kraken2/kraken2": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "krakentools/combinekreports": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "krakentools/kreport2krona": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "krona/ktimporttaxonomy": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "krona/ktimporttext": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "malt/run": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "megan/rma2info": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "metaphlan3/mergemetaphlantables": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "metaphlan3/metaphlan3": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "minimap2/align": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "minimap2/index": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "motus/merge": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "motus/profile": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "multiqc": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "porechop": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "prinseqplusplus": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "samtools/bam2fq": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "samtools/index": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "samtools/stats": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "samtools/view": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" }, "untar": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" } } } } } }