{ "name": "nf-core/taxprofiler", "homePage": "https://github.com/nf-core/taxprofiler", "repos": { "nf-core/modules": { "git_url": "https://github.com/nf-core/modules.git", "modules": { "adapterremoval": { "branch": "master", "git_sha": "879d42c5e28661fe0a5e744c9e2c515868f9e08a" }, "bbmap/bbduk": { "branch": "master", "git_sha": "848ee9a215d02d80be033bfa60881700f2bd914c" }, "bowtie2/align": { "branch": "master", "git_sha": "848ee9a215d02d80be033bfa60881700f2bd914c" }, "bowtie2/build": { "branch": "master", "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "cat/fastq": { "branch": "master", "git_sha": "b034029b59b1198075da8019074bc02051a6100e" }, "centrifuge/centrifuge": { "branch": "master", "git_sha": "d2726fcf75063960f06b36d2229a4c0966614108" }, "centrifuge/kreport": { "branch": "master", "git_sha": "734d0db6079a4aa43b6509b207e5d6feb35d4838" }, "custom/dumpsoftwareversions": { "branch": "master", "git_sha": "5e7b1ef9a5a2d9258635bcbf70fcf37dacd1b247" }, "diamond/blastx": { "branch": "master", "git_sha": "3531824af826c16cd252bc5aa82ae169b244ebaa" }, "fastp": { "branch": "master", "git_sha": "7e8ad566883449e7939062b5e2bcf53fc1e0002f", "patch": "modules/nf-core/modules/fastp/fastp.diff" }, "fastqc": { "branch": "master", "git_sha": "49b18b1639f4f7104187058866a8fab33332bdfe" }, "filtlong": { "branch": "master", "git_sha": "957cb9b83668075f4af101fc99502908cca487e3" }, "gunzip": { "branch": "master", "git_sha": "fa37e0662690c4ec4260dae282fbce08777503e6" }, "kaiju/kaiju": { "branch": "master", "git_sha": "8856f127c58f6af479128be8b8df4d42e442ddbe" }, "kaiju/kaiju2krona": { "branch": "master", "git_sha": "2f0b19240430de6807b1232e6d9d0e8084e8a28f" }, "kaiju/kaiju2table": { "branch": "master", "git_sha": "538dbac98ba9c8f799536cd5a617195501439457" }, "kraken2/kraken2": { "branch": "master", "git_sha": "409a308ba46284d8ebb48c2c1befd6f6433db3f7" }, "krakentools/kreport2krona": { "branch": "master", "git_sha": "233fa70811a03a4cecb2ece483b5c8396e2cee1d" }, "krona/ktimporttaxonomy": { "branch": "master", "git_sha": "0e9fd9370ad1845870b8a9c63fcc47d999a1739e" }, "krona/ktimporttext": { "branch": "master", "git_sha": "cdefbec66999c0b49d8bfeea9d6f9d19056635a2" }, "malt/run": { "branch": "master", "git_sha": "be8d7b3293cac26cc63e4dbfb364deb8ed6ec7e5" }, "megan/rma2info": { "branch": "master", "git_sha": "2d38566eca4cc15142b2ffa7c11837569b39aece" }, "metaphlan3/mergemetaphlantables": { "branch": "master", "git_sha": "36bcd675ae76a379a38165898a203f4915823f4f" }, "metaphlan3/metaphlan3": { "branch": "master", "git_sha": "978087354eb72ac1f6e18a3f790fad9bc4d05840" }, "minimap2/align": { "branch": "master", "git_sha": "1a5a9e7b4009dcf34e6867dd1a5a1d9a718b027b" }, "minimap2/index": { "branch": "master", "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d" }, "motus/merge": { "branch": "master", "git_sha": "b02e648c221e1da17cb589eefe297e61ec9e9c49" }, "motus/profile": { "branch": "master", "git_sha": "b6ed584443ad68ac41e6975994139454a4f23c18" }, "multiqc": { "branch": "master", "git_sha": "16eee433b87b303bda650131ac5a0b1ad725e166" }, "porechop": { "branch": "master", "git_sha": "b78e19b9dae3671db2c7d4346fe04452c1debfab" }, "prinseqplusplus": { "branch": "master", "git_sha": "f1c5384c31e985591716afdd732cf8c2ae29d05b" }, "samtools/bam2fq": { "branch": "master", "git_sha": "5510ea39fe638594bc26ac34cadf4a84bf27d159" }, "samtools/view": { "branch": "master", "git_sha": "5e7b1ef9a5a2d9258635bcbf70fcf37dacd1b247" }, "untar": { "branch": "master", "git_sha": "5e7b1ef9a5a2d9258635bcbf70fcf37dacd1b247" } } } } }