name: nf-core CI # This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors on: push: branches: - dev pull_request: release: types: [published] env: NXF_ANSI_LOG: false concurrency: group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}" cancel-in-progress: true jobs: test: name: Run pipeline with test data # Only run on push if this is the nf-core dev branch (merged PRs) if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/taxprofiler') }}" runs-on: ubuntu-latest strategy: matrix: NXF_VER: - "22.10.1" - "latest-everything" steps: - name: Check out pipeline code uses: actions/checkout@v3 - name: Install Nextflow uses: nf-core/setup-nextflow@v1 with: version: "${{ matrix.NXF_VER }}" - name: Run pipeline with test data # TODO nf-core: You can customise CI pipeline run tests as required # For example: adding multiple test runs with different parameters # Remember that you can parallelise this by using strategy.matrix run: | nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results