name: "eido_validate"
description: Validate samplesheet or PEP config against a schema
keywords:
  - eido
  - validate
  - schema
  - format
  - pep
tools:
  - "validate":
      description: "Validate samplesheet or PEP config against a schema."
      homepage: "http://eido.databio.org/en/latest/"
      documentation: "http://eido.databio.org/en/latest/"
      doi: "10.1093/gigascience/giab077"
      licence: "BSD-2-Clause"

input:
  - samplesheet:
      type: file
      description: Samplesheet or PEP file to be validated
      pattern: "*.{yaml,yml,csv}"
  - schema:
      type: file
      description: Schema that the samplesheet will be validated against
      pattern: "*.{yaml,yml}"
  - pep_input_base_dir:
      type: file
      description: Optional path to the directory where files specified in a PEP config file are stored. Any paths specified in the config will need to be relative to this base directory.

output:
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - log:
      type: file
      description: File containing validation log.
      pattern: "*.log"

authors:
  - "@rafalstepien"