{ "name": "nf-core/taxprofiler", "homePage": "https://github.com/nf-core/taxprofiler", "repos": { "https://github.com/nf-core/modules.git": { "modules": { "nf-core": { "adapterremoval": { "branch": "master", "git_sha": "ce7cf27e377fdacf7ebe8e75903ec70405ea1659", "installed_by": ["modules"] }, "bbmap/bbduk": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "bowtie2/align": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "bowtie2/build": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "bracken/bracken": { "branch": "master", "git_sha": "8cab56516076b23c6f8eb1ac20ba4ce9692c85e1", "installed_by": ["modules"] }, "bracken/combinebrackenoutputs": { "branch": "master", "git_sha": "9c87d5fdad182590a370ea43a4ecebd200a6f6fb", "installed_by": ["modules"] }, "cat/fastq": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "centrifuge/centrifuge": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "centrifuge/kreport": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "custom/dumpsoftwareversions": { "branch": "master", "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c", "installed_by": ["modules"] }, "diamond/blastx": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "falco": { "branch": "master", "git_sha": "fc959214036403ad83efe7a41d43d0606c445cda", "installed_by": ["modules"], "patch": "modules/nf-core/falco/falco.diff" }, "fastp": { "branch": "master", "git_sha": "1e49f31e93c56a3832833eef90a02d3cde5a3f7e", "installed_by": ["modules"] }, "fastqc": { "branch": "master", "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c", "installed_by": ["modules"] }, "filtlong": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "gunzip": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "kaiju/kaiju": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "kaiju/kaiju2krona": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "kaiju/kaiju2table": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "kraken2/kraken2": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "krakentools/combinekreports": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "krakentools/kreport2krona": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "krakenuniq/preloadedkrakenuniq": { "branch": "master", "git_sha": "05649975c6611c6e007537a7984e186e12ae03af", "installed_by": ["modules"] }, "krona/ktimporttaxonomy": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "krona/ktimporttext": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "malt/run": { "branch": "master", "git_sha": "6d9712f03ec2de8264a50ee4541a617e1e063b51", "installed_by": ["modules"] }, "megan/rma2info": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "metaphlan3/mergemetaphlantables": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "metaphlan3/metaphlan3": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "minimap2/align": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "minimap2/index": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "motus/merge": { "branch": "master", "git_sha": "3fce766123e71e82fb384db7d07b59180baa9ee9", "installed_by": ["modules"] }, "motus/profile": { "branch": "master", "git_sha": "3fce766123e71e82fb384db7d07b59180baa9ee9", "installed_by": ["modules"] }, "multiqc": { "branch": "master", "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c", "installed_by": ["modules"] }, "porechop/porechop": { "branch": "master", "git_sha": "2a4e85eb81875a572bb58133e37f84ba3cc484d7", "installed_by": ["modules"] }, "prinseqplusplus": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "samtools/bam2fq": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "samtools/index": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "samtools/stats": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "samtools/view": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] }, "untar": { "branch": "master", "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905", "installed_by": ["modules"] } } } } } }