name: "eido_convert"
description: Convert any PEP project or Nextflow samplesheet to any format
keywords:
  - eido
  - convert
  - PEP
  - format
  - samplesheet
tools:
  - "eido":
      description: "Convert any PEP project or Nextflow samplesheet to any format"
      homepage: "http://eido.databio.org/en/latest/"
      documentation: "http://eido.databio.org/en/latest/"
      doi: "10.1093/gigascience/giab077"
      licence: "BSD-2-Clause"

input:
  - samplesheet:
      type: file
      description: Nextflow samplesheet or PEP project
      pattern: "*.{yaml,yml,csv}"
  - format:
      type: value
      description: Extension of an output file
  - pep_input_base_dir:
      type: file
      description: Optional path to the directory where files specified in a PEP config file are stored. Any paths specified in the config will need to be relative to this base directory.

output:
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - samplesheet_converted:
      type: file
      description: PEP project or samplesheet converted to csv file

authors:
  - "@rafalstepien"