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225 lines
10 KiB
JSON
225 lines
10 KiB
JSON
{
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"name": "nf-core/taxprofiler",
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"homePage": "https://github.com/nf-core/taxprofiler",
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"repos": {
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"https://github.com/nf-core/modules.git": {
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"modules": {
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"nf-core": {
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"adapterremoval": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"bbmap/bbduk": {
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"branch": "master",
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"installed_by": ["modules"]
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},
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"bowtie2/align": {
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"branch": "master",
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"installed_by": ["modules"]
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},
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"bowtie2/build": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"bracken/bracken": {
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"branch": "master",
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"installed_by": ["modules"]
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},
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"bracken/combinebrackenoutputs": {
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"branch": "master",
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"installed_by": ["modules"]
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},
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"cat/fastq": {
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"branch": "master",
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"installed_by": ["modules"]
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},
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"centrifuge/centrifuge": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"centrifuge/kreport": {
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"branch": "master",
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"installed_by": ["modules"]
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"custom/dumpsoftwareversions": {
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"branch": "master",
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"installed_by": ["modules"]
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"diamond/blastx": {
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"installed_by": ["modules"]
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},
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"falco": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"],
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"patch": "modules/nf-core/falco/falco.diff"
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},
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"fastp": {
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"branch": "master",
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"installed_by": ["modules"]
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},
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"fastqc": {
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"branch": "master",
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"installed_by": ["modules"]
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},
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"filtlong": {
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"branch": "master",
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"installed_by": ["modules"]
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},
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"gunzip": {
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"branch": "master",
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"git_sha": "b9829e1064382745d8dff7f1d74d2138d2864f71",
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"installed_by": ["modules"]
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},
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"kaiju/kaiju": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"kaiju/kaiju2krona": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"kaiju/kaiju2table": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"kraken2/kraken2": {
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"branch": "master",
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"git_sha": "7c695e0147df1157413e06246d9b0094617d3e6b",
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"installed_by": ["modules"]
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},
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"krakentools/combinekreports": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"krakentools/kreport2krona": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"krakenuniq/preloadedkrakenuniq": {
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"branch": "master",
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"installed_by": ["modules"]
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},
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"krona/ktimporttaxonomy": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"krona/ktimporttext": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"malt/run": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"megan/rma2info": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"metaphlan3/mergemetaphlantables": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"metaphlan3/metaphlan3": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"minimap2/align": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"minimap2/index": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"motus/merge": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"motus/profile": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"multiqc": {
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"branch": "master",
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"git_sha": "f2d63bd5b68925f98f572eed70993d205cc694b7",
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"installed_by": ["modules"]
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},
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"porechop/porechop": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"],
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"patch": "modules/nf-core/porechop/porechop/porechop-porechop.diff"
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},
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"prinseqplusplus": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"samtools/fastq": {
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"branch": "master",
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"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
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"installed_by": ["modules"]
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},
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"samtools/index": {
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"installed_by": ["modules"]
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},
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"samtools/stats": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"samtools/view": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
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"taxpasta/merge": {
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"branch": "master",
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"git_sha": "ffa9641ee18f88aff974257cb50ba3cf8f7d143c",
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"installed_by": ["modules"]
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},
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"untar": {
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"branch": "master",
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"git_sha": "b9829e1064382745d8dff7f1d74d2138d2864f71",
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"installed_by": ["modules"]
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}
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}
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}
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}
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}
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}
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