Thomas A. Christensen II 6673ccf8d8 Update channel assignment alignment in profiling subworkflow ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>		2022-06-28 09:00:43 -05:00
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db_check.nf	Fix crash, add missing versions	2022-04-23 08:36:01 +02:00
input_check.nf	Update input_check.nf	2022-04-18 07:35:19 +02:00
longread_hostremoval.nf	Implement hostremoval	2022-05-03 09:34:27 +02:00
longread_preprocessing.nf	Fix MALT save_alignemnts reads and some clean up	2022-06-03 22:29:04 +02:00
profiling.nf	Update channel assignment alignment in profiling subworkflow	2022-06-28 09:00:43 -05:00
shortread_adapterremoval.nf	Add initial longread QC filtering - requires filtlong module update	2022-05-01 07:18:14 +02:00
shortread_complexityfiltering.nf	Add FASTP complexity option	2022-05-07 06:09:05 +02:00
shortread_fastp.nf	Add initial longread QC filtering - requires filtlong module update	2022-05-01 07:18:14 +02:00
shortread_hostremoval.nf	Remove flagstat as bowtie2 reports this itself	2022-04-03 17:23:14 +02:00
shortread_preprocessing.nf	Add initial longread QC filtering - requires filtlong module update	2022-05-01 07:18:14 +02:00
visualization_krona.nf	Switch to using raw classifications for Kaiju2Krona	2022-06-28 09:00:41 -05:00