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taxprofiler/modules/nf-core/motus/profile/meta.yml
2022-12-12 15:42:01 +01:00

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name: "motus_profile"
description: Taxonomic meta-omics profiling using universal marker genes
keywords:
- classify
- metagenomics
- fastq
- taxonomic profiling
tools:
- "motus":
description: "Marker gene-based OTU (mOTU) profiling"
homepage: "https://motu-tool.org/"
documentation: "https://github.com/motu-tool/mOTUs/wiki"
tool_dev_url: "https://github.com/motu-tool/mOTUs"
doi: "10.1186/s40168-022-01410-z"
licence: "['GPL v3']"
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input fastq/fasta files of size 1 and 2 for single-end and paired-end data,
respectively.
Or the intermediate bam file mapped by bwa to the mOTUs database or
the output bam file from motus profile.
Or the intermediate mgc read counts table.
pattern: "*.{fastq,fq,fasta,fa,fastq.gz,fq.gz,fasta.gz,fa.gz,.bam,.mgc}"
- db:
type: directory
description: |
mOTUs database downloaded by `motus downloadDB`
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- out:
type: file
description: Results with taxonomic classification of each read
pattern: "*.out"
- bam:
type: file
description: Optional intermediate sorted BAM file from BWA
pattern: "*.{bam}"
- mgc:
type: file
description: Optional intermediate mgc read count table file saved with `-M`.
pattern: "*.{mgc}"
- log:
type: file
description: Standard error logging file containing summary statistics
pattern: "*.log"
authors:
- "@jianhong"