mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-25 20:09:55 +00:00
41 lines
1.1 KiB
YAML
Generated
41 lines
1.1 KiB
YAML
Generated
name: "centrifuge_kreport"
|
|
description: Creates Kraken-style reports from centrifuge out files
|
|
keywords:
|
|
- metagenomics
|
|
tools:
|
|
- centrifuge:
|
|
description: Centrifuge is a classifier for metagenomic sequences.
|
|
homepage: https://ccb.jhu.edu/software/centrifuge/
|
|
documentation: https://ccb.jhu.edu/software/centrifuge/manual.shtml
|
|
doi: 10.1101/gr.210641.116
|
|
licence: ["GPL v3"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- report:
|
|
type: file
|
|
description: File containing the centrifuge classification report
|
|
pattern: "*.{txt}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- kreport:
|
|
type: file
|
|
description: |
|
|
File containing kraken-style report from centrifuge
|
|
out files.
|
|
pattern: "*.{txt}"
|
|
authors:
|
|
- "@sofstam"
|
|
- "@jfy133"
|