mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-22 19:39:54 +00:00
43 lines
1.1 KiB
YAML
Generated
43 lines
1.1 KiB
YAML
Generated
name: bowtie2_build
|
|
description: Builds bowtie index for reference genome
|
|
keywords:
|
|
- build
|
|
- index
|
|
- fasta
|
|
- genome
|
|
- reference
|
|
tools:
|
|
- bowtie2:
|
|
description: |
|
|
Bowtie 2 is an ultrafast and memory-efficient tool for aligning
|
|
sequencing reads to long reference sequences.
|
|
homepage: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
|
|
documentation: http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml
|
|
doi: 10.1038/nmeth.1923
|
|
licence: ["GPL-3.0-or-later"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing reference information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: Input genome fasta file
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing reference information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- index:
|
|
type: file
|
|
description: Bowtie2 genome index files
|
|
pattern: "*.bt2"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@joseespinosa"
|
|
- "@drpatelh"
|