You cannot select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
40 lines
1.1 KiB
YAML
40 lines
1.1 KiB
YAML
name: "eido_convert"
|
|
description: Convert any PEP project or Nextflow samplesheet to any format
|
|
keywords:
|
|
- eido
|
|
- convert
|
|
- PEP
|
|
- format
|
|
- samplesheet
|
|
tools:
|
|
- "eido":
|
|
description: "Convert any PEP project or Nextflow samplesheet to any format"
|
|
homepage: "http://eido.databio.org/en/latest/"
|
|
documentation: "http://eido.databio.org/en/latest/"
|
|
doi: "10.1093/gigascience/giab077"
|
|
licence: "BSD-2-Clause"
|
|
|
|
input:
|
|
- samplesheet:
|
|
type: file
|
|
description: Nextflow samplesheet or PEP project
|
|
pattern: "*.{yaml,yml,csv}"
|
|
- format:
|
|
type: value
|
|
description: Extension of an output file
|
|
- pep_input_base_dir:
|
|
type: file
|
|
description: Optional path to the directory where files specified in a PEP config file are stored. Any paths specified in the config will need to be relative to this base directory.
|
|
|
|
output:
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- samplesheet_converted:
|
|
type: file
|
|
description: PEP project or samplesheet converted to csv file
|
|
|
|
authors:
|
|
- "@rafalstepien"
|