mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-14 07:03:09 +00:00
33 lines
1.2 KiB
YAML
33 lines
1.2 KiB
YAML
name: nf-core AWS full size tests
|
|
# This workflow is triggered on published releases.
|
|
# It can be additionally triggered manually with GitHub actions workflow dispatch button.
|
|
# It runs the -profile 'test_full' on AWS batch
|
|
|
|
on:
|
|
release:
|
|
types: [published]
|
|
workflow_dispatch:
|
|
jobs:
|
|
run-tower:
|
|
name: Run AWS full tests
|
|
if: github.repository == 'nf-core/taxprofiler'
|
|
runs-on: ubuntu-latest
|
|
steps:
|
|
- name: Launch workflow via tower
|
|
uses: nf-core/tower-action@v3
|
|
# Add full size test data (but still relatively small datasets for few samples)
|
|
# on the `test_full.config` test runs with only one set of parameters
|
|
with:
|
|
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
|
|
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
|
|
compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
|
|
workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }}
|
|
parameters: |
|
|
{
|
|
"outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/taxprofiler/results-${{ github.sha }}"
|
|
}
|
|
profiles: test_full,aws_tower
|
|
- uses: actions/upload-artifact@v3
|
|
with:
|
|
name: Tower debug log file
|
|
path: tower_action_*.log
|