James A. Fellows Yates 3ca9058b9c Merge pull request #133 from rafalstepien/add-pep-support ... Add working version of PEP-nf-core integration		2022-09-30 10:21:15 +02:00
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db_check.nf	remove the database auto-download for mOTUs.	2022-06-03 14:13:58 -04:00
input_check.nf	Move to a function	2022-09-27 15:46:17 +02:00
longread_hostremoval.nf	Implement hostremoval	2022-05-03 09:34:27 +02:00
longread_preprocessing.nf	Make longread quality ftilering opt out	2022-08-30 14:08:05 +02:00
profiling.nf	Ensure merge metaphlan3 tables happens on per database basis	2022-09-15 12:29:54 +02:00
shortread_adapterremoval.nf	Add initial longread QC filtering - requires filtlong module update	2022-05-01 07:18:14 +02:00
shortread_complexityfiltering.nf	Add FASTP complexity option	2022-05-07 06:09:05 +02:00
shortread_fastp.nf	Add initial longread QC filtering - requires filtlong module update	2022-05-01 07:18:14 +02:00
shortread_hostremoval.nf	Module update	2022-09-08 08:08:36 +02:00
shortread_preprocessing.nf	Add initial longread QC filtering - requires filtlong module update	2022-05-01 07:18:14 +02:00
standardisation_profiles.nf	Merge branch 'dev' into metaphlan3/mergemetaphlantables	2022-09-16 16:02:38 +02:00
visualization_krona.nf	Update subworkflows/local/visualization_krona.nf	2022-09-02 16:15:46 +02:00