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57 lines
1.6 KiB
YAML
57 lines
1.6 KiB
YAML
description: A schema for validation of samplesheet.csv for taxprofiler pipeline.
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imports:
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- https://schema.databio.org/pep/2.1.0.yaml
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properties:
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samples:
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type: array
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items:
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type: object
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properties:
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sample:
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type: string
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description: "Sample identifier."
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pattern: "^\\S*$"
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run_accession:
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type: string
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description: "Run accession number."
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instrument_platform:
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type: string
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description: "Name of the platform that sequenced the samples."
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enum:
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[
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"ABI_SOLID",
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"BGISEQ",
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"CAPILLARY",
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"COMPLETE_GENOMICS",
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"DNBSEQ",
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"HELICOS",
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"ILLUMINA",
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"ION_TORRENT",
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"LS454",
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"OXFORD_NANOPORE",
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"PACBIO_SMRT",
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]
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fastq1:
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type: ["string", "null"]
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description: "Optional FASTQ file for read 1 of paired-end sequenced libraries."
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pattern: "^[\\S]+.(fq\\.gz|fastq\\.gz)$"
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fastq2:
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type: ["string", "null"]
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description: "Optional FASTQ file for read 2 of paired-end sequenced libraries."
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pattern: "^[\\S]+.(fq\\.gz|fastq\\.gz)$"
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fasta:
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type: ["string", "null"]
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description: "Optional FASTA file."
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pattern: "^[\\S]+.(fa\\.gz|fasta\\.gz)$"
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required:
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- sample
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- run_accession
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- instrument_platform
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files:
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- fastq1
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- fastq2
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- fasta
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required:
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- samples
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- run_accession
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- instrument_platform
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