1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-09-21 07:22:05 +00:00
taxprofiler/modules.json
2022-09-14 11:20:40 +02:00

147 lines
5.9 KiB
JSON

{
"name": "nf-core/taxprofiler",
"homePage": "https://github.com/nf-core/taxprofiler",
"repos": {
"nf-core/modules": {
"git_url": "https://github.com/nf-core/modules.git",
"modules": {
"adapterremoval": {
"branch": "master",
"git_sha": "879d42c5e28661fe0a5e744c9e2c515868f9e08a"
},
"bbmap/bbduk": {
"branch": "master",
"git_sha": "848ee9a215d02d80be033bfa60881700f2bd914c"
},
"bowtie2/align": {
"branch": "master",
"git_sha": "848ee9a215d02d80be033bfa60881700f2bd914c"
},
"bowtie2/build": {
"branch": "master",
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"cat/fastq": {
"branch": "master",
"git_sha": "b034029b59b1198075da8019074bc02051a6100e"
},
"centrifuge/centrifuge": {
"branch": "master",
"git_sha": "d2726fcf75063960f06b36d2229a4c0966614108"
},
"centrifuge/kreport": {
"branch": "master",
"git_sha": "734d0db6079a4aa43b6509b207e5d6feb35d4838"
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "5e7b1ef9a5a2d9258635bcbf70fcf37dacd1b247"
},
"diamond/blastx": {
"branch": "master",
"git_sha": "3531824af826c16cd252bc5aa82ae169b244ebaa"
},
"fastp": {
"branch": "master",
"git_sha": "2c70c1c1951aaf884d2e8d8d9c871db79f7b35aa"
},
"fastqc": {
"branch": "master",
"git_sha": "49b18b1639f4f7104187058866a8fab33332bdfe"
},
"filtlong": {
"branch": "master",
"git_sha": "957cb9b83668075f4af101fc99502908cca487e3"
},
"gunzip": {
"branch": "master",
"git_sha": "fa37e0662690c4ec4260dae282fbce08777503e6"
},
"kaiju/kaiju": {
"branch": "master",
"git_sha": "8856f127c58f6af479128be8b8df4d42e442ddbe"
},
"kaiju/kaiju2krona": {
"branch": "master",
"git_sha": "2f0b19240430de6807b1232e6d9d0e8084e8a28f"
},
"kaiju/kaiju2table": {
"branch": "master",
"git_sha": "538dbac98ba9c8f799536cd5a617195501439457"
},
"kraken2/kraken2": {
"branch": "master",
"git_sha": "409a308ba46284d8ebb48c2c1befd6f6433db3f7"
},
"krakentools/combinekreports": {
"branch": "master",
"git_sha": "ee0346b4d14ffdc15ce7e093ca1363cd07c9bd78"
},
"krakentools/kreport2krona": {
"branch": "master",
"git_sha": "233fa70811a03a4cecb2ece483b5c8396e2cee1d"
},
"krona/ktimporttaxonomy": {
"branch": "master",
"git_sha": "0e9fd9370ad1845870b8a9c63fcc47d999a1739e"
},
"krona/ktimporttext": {
"branch": "master",
"git_sha": "cdefbec66999c0b49d8bfeea9d6f9d19056635a2"
},
"malt/run": {
"branch": "master",
"git_sha": "be8d7b3293cac26cc63e4dbfb364deb8ed6ec7e5"
},
"megan/rma2info": {
"branch": "master",
"git_sha": "2d38566eca4cc15142b2ffa7c11837569b39aece"
},
"metaphlan3/metaphlan3": {
"branch": "master",
"git_sha": "940d7fe9d63962e0e2ba0987e2893fb0aff832e3"
},
"minimap2/align": {
"branch": "master",
"git_sha": "1a5a9e7b4009dcf34e6867dd1a5a1d9a718b027b"
},
"minimap2/index": {
"branch": "master",
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"motus/merge": {
"branch": "master",
"git_sha": "b02e648c221e1da17cb589eefe297e61ec9e9c49"
},
"motus/profile": {
"branch": "master",
"git_sha": "b6ed584443ad68ac41e6975994139454a4f23c18"
},
"multiqc": {
"branch": "master",
"git_sha": "16eee433b87b303bda650131ac5a0b1ad725e166"
},
"porechop": {
"branch": "master",
"git_sha": "b78e19b9dae3671db2c7d4346fe04452c1debfab"
},
"prinseqplusplus": {
"branch": "master",
"git_sha": "f1c5384c31e985591716afdd732cf8c2ae29d05b"
},
"samtools/bam2fq": {
"branch": "master",
"git_sha": "5510ea39fe638594bc26ac34cadf4a84bf27d159"
},
"samtools/view": {
"branch": "master",
"git_sha": "5e7b1ef9a5a2d9258635bcbf70fcf37dacd1b247"
},
"untar": {
"branch": "master",
"git_sha": "393dbd6ddafe3f18eac02893dd4a21e4d45de679"
}
}
}
}
}