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39 lines
1.1 KiB
YAML
Generated
39 lines
1.1 KiB
YAML
Generated
name: "eido_convert"
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description: Convert any PEP project or Nextflow samplesheet to any format
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keywords:
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- eido
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- convert
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- PEP
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- format
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- samplesheet
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tools:
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- "eido":
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description: "Convert any PEP project or Nextflow samplesheet to any format"
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homepage: "http://eido.databio.org/en/latest/"
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documentation: "http://eido.databio.org/en/latest/"
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doi: "10.1093/gigascience/giab077"
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licence: "BSD-2-Clause"
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input:
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- samplesheet:
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type: file
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description: Nextflow samplesheet or PEP project
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pattern: "*.{yaml,yml,csv}"
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- format:
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type: value
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description: Extension of an output file
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- pep_input_base_dir:
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type: file
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description: Optional path to the directory where files specified in a PEP config file are stored. Any paths specified in the config will need to be relative to this base directory.
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- samplesheet_converted:
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type: file
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description: PEP project or samplesheet converted to csv file
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authors:
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- "@rafalstepien"
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