taxprofiler/CHANGELOG.md

nf-core/taxprofiler: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

dev

Added

• #272 - Add saving of final 'analysis-ready-reads' to dedicated directory. (❤️ to @alexhbnr for reporting, added by @jfy133)

Fixed

• #271 Improved standardised table generation documentation nd mOTUs manual database download tutorial (♥ to @prototaxites for reporting, fix by @jfy133)
• #269 Reduced output files in AWS full test output due to very large files
• #270 Fixed warning for host removal index parameter, and improved index checks (♥ to @prototaxites for reporting, fix by @jfy133)
• #274 Substituted the samtools/bam2fq module with samtools/fastq module (fix by @sofstam)

Dependencies

Deprecated

v1.0.0 - Dodgy Dachshund [2023-03-13]

Initial release of nf-core/taxprofiler, created with the nf-core template.

• Add read quality control (sequencing QC, adapter removal and merging)
• Add read complexity filtering
• Add host-reads removal step
• Add run merging
• Add taxonomic classification
• Add taxon table standardisation
• Add post-classification visualisation

Added

Fixed

Dependencies

Deprecated