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55 lines
1.6 KiB
YAML
Generated
55 lines
1.6 KiB
YAML
Generated
name: MultiQC
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description: Aggregate results from bioinformatics analyses across many samples into a single report
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keywords:
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- QC
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- bioinformatics tools
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- Beautiful stand-alone HTML report
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tools:
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- multiqc:
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description: |
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MultiQC searches a given directory for analysis logs and compiles a HTML report.
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It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
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homepage: https://multiqc.info/
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documentation: https://multiqc.info/docs/
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licence: ["GPL-3.0-or-later"]
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input:
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- multiqc_files:
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type: file
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description: |
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List of reports / files recognised by MultiQC, for example the html and zip output of FastQC
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- multiqc_config:
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type: file
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description: Optional config yml for MultiQC
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pattern: "*.{yml,yaml}"
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- extra_multiqc_config:
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type: file
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description: Second optional config yml for MultiQC. Will override common sections in multiqc_config.
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pattern: "*.{yml,yaml}"
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- multiqc_logo:
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type: file
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description: Optional logo file for MultiQC
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pattern: "*.{png}"
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output:
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- report:
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type: file
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description: MultiQC report file
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pattern: "multiqc_report.html"
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- data:
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type: dir
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description: MultiQC data dir
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pattern: "multiqc_data"
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- plots:
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type: file
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description: Plots created by MultiQC
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pattern: "*_data"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@abhi18av"
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- "@bunop"
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- "@drpatelh"
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- "@jfy133"
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