mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-29 09:59:55 +00:00
57 lines
1.8 KiB
YAML
57 lines
1.8 KiB
YAML
report_comment: >
|
|
This report has been generated by the <a href="https://github.com/nf-core/taxprofiler" target="_blank">nf-core/taxprofiler</a>
|
|
analysis pipeline. For information about how to interpret these results, please see the
|
|
<a href="https://nf-co.re/taxprofiler" target="_blank">documentation</a>.
|
|
report_section_order:
|
|
"nf-core-taxprofiler-methods-description":
|
|
order: -1000
|
|
software_versions:
|
|
order: -1001
|
|
"nf-core-taxprofiler-summary":
|
|
order: -1002
|
|
|
|
export_plots: true
|
|
|
|
custom_logo: "nf-core-taxprofiler_logo_custom_light.png"
|
|
custom_logo_url: https://nf-co.re/taxprofiler
|
|
custom_logo_title: "nf-core/taxprofiler"
|
|
|
|
run_modules:
|
|
- fastqc
|
|
- adapterRemoval
|
|
- fastp
|
|
- bowtie2
|
|
- samtools
|
|
- kraken
|
|
- malt
|
|
- custom_content
|
|
|
|
#extra_fn_clean_exts:
|
|
# - '_fastp'
|
|
# - '.pe.settings'
|
|
# - '.se.settings'
|
|
|
|
top_modules:
|
|
- "fastqc":
|
|
name: "FastQC (pre-Trimming)"
|
|
path_filters:
|
|
- "*raw_*fastqc.zip"
|
|
- "fastp"
|
|
- "adapterRemoval"
|
|
- "fastqc":
|
|
name: "FastQC (post-Trimming)"
|
|
path_filters:
|
|
- "*raw_*processed.zip"
|
|
- "kraken":
|
|
name: "Kraken"
|
|
path_filters:
|
|
- "*.kraken2.report.txt"
|
|
- "kraken":
|
|
name: "Centrifuge"
|
|
anchor: "centrifuge"
|
|
target: "Centrifuge"
|
|
doi: "10.1101/gr.210641.116"
|
|
info: "is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index. Note: Figure title"
|
|
extra: "Note: plot title will say Kraken2 due to Centrifuge producing the same output format as Kraken. If activated, see the actual Kraken2 results in the section above."
|
|
path_filters:
|
|
- "*.centrifuge.txt"
|