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36 lines
1.4 KiB
YAML
36 lines
1.4 KiB
YAML
name: nf-core AWS full size tests
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# This workflow is triggered on published releases.
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# It can be additionally triggered manually with GitHub actions workflow dispatch button.
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# It runs the -profile 'test_full' on AWS batch
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on:
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release:
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types: [published]
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workflow_dispatch:
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jobs:
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run-tower:
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name: Run AWS full tests
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if: github.repository == 'nf-core/taxprofiler'
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runs-on: ubuntu-latest
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steps:
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- name: Launch workflow via tower
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uses: nf-core/tower-action@v3
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# TODO nf-core: You can customise AWS full pipeline tests as required
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# Add full size test data (but still relatively small datasets for few samples)
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# on the `test_full.config` test runs with only one set of parameters
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with:
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workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
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access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
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compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
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pipeline: ${{ github.repository }}
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revision: ${{ github.sha }}
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workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }}
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parameters: |
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{
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"outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/taxprofiler/results-${{ github.sha }}"
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}
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profiles: test_full,aws_tower
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nextflow_config: |
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process.errorStrategy = 'retry'
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process.maxRetries = 3
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