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37 lines
1.4 KiB
JSON
37 lines
1.4 KiB
JSON
{
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"$schema": "http://json-schema.org/draft-07/schema",
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"$id": "https://raw.githubusercontent.com/nf-core/taxprofiler/master/assets/schema_input.json",
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"title": "nf-core/taxprofiler pipeline - params.input schema",
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"description": "Schema for the file provided with params.input",
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"type": "array",
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"items": {
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"type": "object",
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"properties": {
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"sample": {
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"type": "string",
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"pattern": "^\\S+$",
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"errorMessage": "Sample name must be provided and cannot contain spaces"
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},
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"fastq_1": {
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"type": "string",
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"pattern": "^\\S+\\.f(ast)?q\\.gz$",
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"errorMessage": "FastQ file for reads 1 must be provided, cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'"
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},
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"fastq_2": {
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"errorMessage": "FastQ file for reads 2 cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'",
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"anyOf": [
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{
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"type": "string",
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"pattern": "^\\S+\\.f(ast)?q\\.gz$"
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},
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{
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"type": "string",
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"maxLength": 0
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}
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]
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}
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},
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"required": ["sample", "fastq_1"]
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}
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}
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