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44 lines
1.2 KiB
YAML
Generated
44 lines
1.2 KiB
YAML
Generated
name: "metaphlan3_mergemetaphlantables"
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description: Merges output abundance tables from MetaPhlAn3
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keywords:
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- metagenomics
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- classification
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- merge
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- table
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- profiles
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tools:
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- metaphlan3:
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description: Identify clades (phyla to species) present in the metagenome obtained from a microbiome sample and their relative abundance
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homepage: https://huttenhower.sph.harvard.edu/metaphlan/
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documentation: https://github.com/biobakery/MetaPhlAn
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doi: "10.7554/eLife.65088"
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licence: ["MIT License"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- profiles:
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type: file
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description: List of per-sample MetaPhlAn3 taxonomic abundance tables
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pattern: "*"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- txt:
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type: txt
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description: Combined MetaPhlAn3 table
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pattern: "*.txt"
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authors:
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- "@jfy133"
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