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25 lines
804 B
Text
25 lines
804 B
Text
process SAMPLESHEET_CHECK {
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tag "$samplesheet"
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conda (params.enable_conda ? "conda-forge::python=3.8.3" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/python:3.8.3' :
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'quay.io/biocontainers/python:3.8.3' }"
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input:
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path samplesheet
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output:
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path '*.csv' , emit: csv
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path "versions.yml", emit: versions
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script: // detect_reads.py script is bundled with the pipeline, in nf-core/taxprofiler/bin/
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"""
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python3 $projectDir/bin/detect_reads.py $samplesheet samplesheet_validated.csv
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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python: \$(python --version | sed 's/Python //g')
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END_VERSIONS
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"""
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}
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