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taxprofiler/subworkflows/local
James A. Fellows Yates 8082c7d108
Merge pull request #97 from nf-core/malt-to-krona
Add Krona support for MALT
2022-07-05 15:17:52 +02:00
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db_check.nf remove the database auto-download for mOTUs. 2022-06-03 14:13:58 -04:00
input_check.nf Update input_check.nf 2022-04-18 07:35:19 +02:00
longread_hostremoval.nf Implement hostremoval 2022-05-03 09:34:27 +02:00
longread_preprocessing.nf Fix MALT save_alignemnts reads and some clean up 2022-06-03 22:29:04 +02:00
profiling.nf Merge branch 'dev' into motus 2022-07-04 13:14:42 +02:00
shortread_adapterremoval.nf Add initial longread QC filtering - requires filtlong module update 2022-05-01 07:18:14 +02:00
shortread_complexityfiltering.nf Add FASTP complexity option 2022-05-07 06:09:05 +02:00
shortread_fastp.nf Add initial longread QC filtering - requires filtlong module update 2022-05-01 07:18:14 +02:00
shortread_hostremoval.nf Remove flagstat as bowtie2 reports this itself 2022-04-03 17:23:14 +02:00
shortread_preprocessing.nf Add initial longread QC filtering - requires filtlong module update 2022-05-01 07:18:14 +02:00
visualization_krona.nf Add support for MALT display in Krona, tweaks other krona modules to dispaly tool name in output file 2022-06-30 18:33:11 +02:00