mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-25 22:09:55 +00:00
54 lines
1.5 KiB
YAML
Generated
54 lines
1.5 KiB
YAML
Generated
name: malt_run
|
|
description: MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
|
|
keywords:
|
|
- malt
|
|
- alignment
|
|
- metagenomics
|
|
- ancient DNA
|
|
- aDNA
|
|
- palaeogenomics
|
|
- archaeogenomics
|
|
- microbiome
|
|
tools:
|
|
- malt:
|
|
description: A tool for mapping metagenomic data
|
|
homepage: https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/malt/
|
|
documentation: https://software-ab.informatik.uni-tuebingen.de/download/malt/manual.pdf
|
|
tool_dev_url: None
|
|
doi: "10.1038/s41559-017-0446-6"
|
|
licence: ["GPL v3"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fastqs:
|
|
type: file
|
|
description: Input FASTQ files
|
|
pattern: "*.{fastq.gz,fq.gz}"
|
|
- index:
|
|
type: directory
|
|
description: Index/database directory from malt-build
|
|
pattern: "*/"
|
|
output:
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- rma6:
|
|
type: file
|
|
description: MEGAN6 RMA6 file
|
|
pattern: "*.rma6"
|
|
- sam:
|
|
type: file
|
|
description: Alignment files in Tab, Text or MEGAN-compatible SAM format
|
|
pattern: "*.{tab,txt,sam}"
|
|
- log:
|
|
type: file
|
|
description: Log of verbose MALT stdout
|
|
pattern: "*-malt-run.log"
|
|
|
|
authors:
|
|
- "@jfy133"
|