mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-24 09:49:56 +00:00
55 lines
1.5 KiB
YAML
Generated
55 lines
1.5 KiB
YAML
Generated
name: filtlong
|
|
description: Filtlong filters long reads based on quality measures or short read data.
|
|
keywords:
|
|
- nanopore
|
|
- quality control
|
|
- QC
|
|
- filtering
|
|
- long reads
|
|
- short reads
|
|
tools:
|
|
- filtlong:
|
|
description: Filtlong is a tool for filtering long reads. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter.
|
|
homepage: https://anaconda.org/bioconda/filtlong
|
|
documentation: None
|
|
tool_dev_url: https://github.com/rrwick/Filtlong
|
|
doi: ""
|
|
licence: ["GPL v3"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- shortreads:
|
|
type: file
|
|
description: fastq file
|
|
pattern: "*.{fq,fastq,fq.gz,fastq.gz}"
|
|
- longreads:
|
|
type: file
|
|
description: fastq file
|
|
pattern: "*.{fq,fastq,fq.gz,fastq.gz}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- reads:
|
|
type: file
|
|
description: Filtered (compressed) fastq file
|
|
pattern: "*.fastq.gz"
|
|
- log:
|
|
type: file
|
|
description: Standard error logging file containing summary statistics
|
|
pattern: "*.log"
|
|
|
|
authors:
|
|
- "@d4straub"
|
|
- "@sofstam"
|