mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-23 21:29:55 +00:00
43 lines
1.3 KiB
YAML
43 lines
1.3 KiB
YAML
name: nf-core CI
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# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
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on:
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push:
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branches:
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- dev
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pull_request:
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release:
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types: [published]
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env:
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NXF_ANSI_LOG: false
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concurrency:
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group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}"
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cancel-in-progress: true
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jobs:
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test:
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name: Run pipeline with test data
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# Only run on push if this is the nf-core dev branch (merged PRs)
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if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/taxprofiler') }}"
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runs-on: ubuntu-latest
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strategy:
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matrix:
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NXF_VER:
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- "22.10.1"
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- "latest-everything"
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steps:
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- name: Check out pipeline code
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uses: actions/checkout@v3
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- name: Install Nextflow
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uses: nf-core/setup-nextflow@v1
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with:
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version: "${{ matrix.NXF_VER }}"
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- name: Run pipeline with test data
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# TODO nf-core: You can customise CI pipeline run tests as required
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# For example: adding multiple test runs with different parameters
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# Remember that you can parallelise this by using strategy.matrix
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run: |
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nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results
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