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66 lines
2.8 KiB
Plaintext
66 lines
2.8 KiB
Plaintext
/*
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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nf-core/taxprofiler Nextflow base config file
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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A 'blank slate' config file, appropriate for general use on most high performance
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compute environments. Assumes that all software is installed and available on
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the PATH. Runs in `local` mode - all jobs will be run on the logged in environment.
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----------------------------------------------------------------------------------------
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*/
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process {
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// TODO nf-core: Check the defaults for all processes
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cpus = { check_max( 1 * task.attempt, 'cpus' ) }
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memory = { check_max( 6.GB * task.attempt, 'memory' ) }
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time = { check_max( 4.h * task.attempt, 'time' ) }
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errorStrategy = { task.exitStatus in ((130..145) + 104) ? 'retry' : 'finish' }
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maxRetries = 1
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maxErrors = '-1'
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// Process-specific resource requirements
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// NOTE - Please try and re-use the labels below as much as possible.
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// These labels are used and recognised by default in DSL2 files hosted on nf-core/modules.
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// If possible, it would be nice to keep the same label naming convention when
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// adding in your local modules too.
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// TODO nf-core: Customise requirements for specific processes.
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// See https://www.nextflow.io/docs/latest/config.html#config-process-selectors
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withLabel:process_single {
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cpus = { check_max( 1 , 'cpus' ) }
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memory = { check_max( 6.GB * task.attempt, 'memory' ) }
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time = { check_max( 4.h * task.attempt, 'time' ) }
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}
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withLabel:process_low {
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cpus = { check_max( 2 * task.attempt, 'cpus' ) }
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memory = { check_max( 12.GB * task.attempt, 'memory' ) }
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time = { check_max( 4.h * task.attempt, 'time' ) }
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}
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withLabel:process_medium {
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cpus = { check_max( 6 * task.attempt, 'cpus' ) }
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memory = { check_max( 36.GB * task.attempt, 'memory' ) }
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time = { check_max( 8.h * task.attempt, 'time' ) }
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}
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withLabel:process_high {
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cpus = { check_max( 12 * task.attempt, 'cpus' ) }
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memory = { check_max( 72.GB * task.attempt, 'memory' ) }
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time = { check_max( 16.h * task.attempt, 'time' ) }
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}
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withLabel:process_long {
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time = { check_max( 20.h * task.attempt, 'time' ) }
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}
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withLabel:process_high_memory {
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memory = { check_max( 200.GB * task.attempt, 'memory' ) }
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}
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withLabel:error_ignore {
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errorStrategy = 'ignore'
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}
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withLabel:error_retry {
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errorStrategy = 'retry'
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maxRetries = 2
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}
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withName:CUSTOM_DUMPSOFTWAREVERSIONS {
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cache = false
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}
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}
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