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taxprofiler/modules/nf-core/kaiju/kaiju2krona/meta.yml
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name: kaiju_kaiju2krona
description: Convert Kaiju's tab-separated output file into a tab-separated text file which can be imported into Krona.
keywords:
- taxonomy
- visualisation
- krona chart
- metagenomics
tools:
- "kaiju":
description: Fast and sensitive taxonomic classification for metagenomics
homepage: https://kaiju.binf.ku.dk/
documentation: https://github.com/bioinformatics-centre/kaiju/blob/master/README.md
tool_dev_url: https://github.com/bioinformatics-centre/kaiju
doi: "10.1038/ncomms11257"
licence: ["GNU GPL v3"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- tsv:
type: file
description: Kaiju tab-separated output file
pattern: "*.{tsv,txt}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- txt:
type: file
description: Krona text-based input file converted from Kaiju report
pattern: "*.{txt,krona}"
authors:
- "@MillironX"