James A. Fellows Yates 3d662d2e06 Merge branch 'dev' into complexity-filter-bbduk		2022-04-04 21:19:36 +02:00
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adapterremoval	Start working on adding adapterremoval	2022-03-31 15:31:45 +02:00
bbmap/bbduk	Add bbduk complexity (entropy-based) filtering	2022-04-02 17:02:05 +02:00
cat/fastq	Get skeleton read processing to input for profiling	2022-02-18 16:51:01 +01:00
custom/dumpsoftwareversions	Template update for nf-core/tools version 2.3.1	2022-03-23 13:57:56 +00:00
fastp	Get skeleton read processing to input for profiling	2022-02-18 16:51:01 +01:00
fastqc	Template update for nf-core/tools version 2.3.1	2022-03-23 13:57:56 +00:00
kraken2/kraken2	Add Kraken2 and MALT/run as Proof of Concept (currnetly MQC issue)	2022-03-03 17:42:02 +01:00
malt/run	Fix MALT multiqc report clash	2022-03-03 18:04:03 +01:00
metaphlan3	chore: add metaphlan3 module	2022-04-02 14:59:44 +02:00
multiqc	Template update for nf-core/tools version 2.3.1	2022-03-23 13:57:56 +00:00
porechop	Add Porechop module	2022-03-18 14:34:10 +01:00
prinseqplusplus	Add prinseq as alternative complexity filtering	2022-04-04 21:16:51 +02:00
untar	Adds PoC of untarring system	2022-03-21 14:58:19 +00:00