mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-14 08:33:09 +00:00
44 lines
1.2 KiB
YAML
Generated
44 lines
1.2 KiB
YAML
Generated
name: "metaphlan3_mergemetaphlantables"
|
|
description: Merges output abundance tables from MetaPhlAn3
|
|
keywords:
|
|
- metagenomics
|
|
- classification
|
|
- merge
|
|
- table
|
|
- profiles
|
|
tools:
|
|
- metaphlan3:
|
|
description: Identify clades (phyla to species) present in the metagenome obtained from a microbiome sample and their relative abundance
|
|
homepage: https://huttenhower.sph.harvard.edu/metaphlan/
|
|
documentation: https://github.com/biobakery/MetaPhlAn
|
|
doi: "10.7554/eLife.65088"
|
|
licence: ["MIT License"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- profiles:
|
|
type: file
|
|
description: List of per-sample MetaPhlAn3 taxonomic abundance tables
|
|
pattern: "*"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- txt:
|
|
type: txt
|
|
description: Combined MetaPhlAn3 table
|
|
pattern: "*.txt"
|
|
|
|
authors:
|
|
- "@jfy133"
|