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42 lines
1.2 KiB
YAML
42 lines
1.2 KiB
YAML
name: "bracken_combinebrackenoutputs"
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description: Combine output of metagenomic samples analyzed by bracken.
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keywords:
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- sort
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tools:
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- "bracken":
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description: Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
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homepage: https://ccb.jhu.edu/software/bracken/
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documentation: https://ccb.jhu.edu/software/bracken/index.shtml?t=manual
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tool_dev_url: https://github.com/jenniferlu717/Bracken
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doi: "10.7717/peerj-cs.104"
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licence: ["GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- input:
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type: file
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description: List of output files from bracken
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pattern: "*"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- txt:
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type: file
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description: Combined output in table format
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pattern: "*.txt"
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authors:
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- "@jfy133"
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