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45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
name: kaiju_kaiju2krona
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description: Convert Kaiju's tab-separated output file into a tab-separated text file which can be imported into Krona.
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keywords:
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- taxonomy
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- visualisation
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- krona chart
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- metagenomics
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tools:
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- "kaiju":
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description: Fast and sensitive taxonomic classification for metagenomics
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homepage: https://kaiju.binf.ku.dk/
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documentation: https://github.com/bioinformatics-centre/kaiju/blob/master/README.md
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tool_dev_url: https://github.com/bioinformatics-centre/kaiju
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doi: "10.1038/ncomms11257"
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licence: ["GNU GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- tsv:
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type: file
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description: Kaiju tab-separated output file
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pattern: "*.{tsv,txt}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- txt:
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type: file
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description: Krona text-based input file converted from Kaiju report
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pattern: "*.{txt,krona}"
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authors:
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- "@MillironX"
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