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55 lines
1.5 KiB
YAML
55 lines
1.5 KiB
YAML
name: "motus_merge"
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description: Taxonomic meta-omics profiling using universal marker genes
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keywords:
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- classify
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- metagenomics
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- fastq
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- taxonomic profiling
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- merging
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- merge
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- otu table
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tools:
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- "motus":
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description: "Marker gene-based OTU (mOTU) profiling"
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homepage: "https://motu-tool.org/"
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documentation: "https://github.com/motu-tool/mOTUs/wiki"
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tool_dev_url: "https://github.com/motu-tool/mOTUs"
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doi: "10.1186/s40168-022-01410-z"
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licence: "['GPL v3']"
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input:
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- input:
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type: file
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description: |
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List of output files (more than one) from motus profile,
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or a single directory containing motus output files.
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- db:
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type: directory
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description: |
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mOTUs database downloaded by `motus downloadDB`
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pattern: "db_mOTU/"
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- profile_version_yml:
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type: file
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description: |
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A single versions.yml file output from motus/profile. motus/merge cannot reconstruct
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this itself without having the motus database present and configured with the tool
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so here we take it from what is already reported by the upstream module.
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pattern: "versions.yml"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- txt:
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type: file
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description: OTU table in txt format, if BIOM format not requested
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pattern: "*.txt"
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- biom:
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type: file
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description: OTU table in biom format, if BIOM format requested
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pattern: "*.biom"
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authors:
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- "@jfy133"
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