mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-14 19:03:09 +00:00
41 lines
1.2 KiB
YAML
Generated
41 lines
1.2 KiB
YAML
Generated
name: "bracken_combinebrackenoutputs"
|
|
description: Combine output of metagenomic samples analyzed by bracken.
|
|
keywords:
|
|
- sort
|
|
tools:
|
|
- "bracken":
|
|
description: Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
|
|
homepage: https://ccb.jhu.edu/software/bracken/
|
|
documentation: https://ccb.jhu.edu/software/bracken/index.shtml?t=manual
|
|
tool_dev_url: https://github.com/jenniferlu717/Bracken
|
|
doi: "10.7717/peerj-cs.104"
|
|
licence: ["GPL v3"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- input:
|
|
type: file
|
|
description: List of output files from bracken
|
|
pattern: "*"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- txt:
|
|
type: file
|
|
description: Combined output in table format
|
|
pattern: "*.txt"
|
|
|
|
authors:
|
|
- "@jfy133"
|