mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-22 18:29:55 +00:00
27 lines
761 B
Text
27 lines
761 B
Text
process SAMPLESHEET_CHECK {
|
|
tag "$samplesheet"
|
|
|
|
conda "conda-forge::python=3.8.3"
|
|
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
|
|
'https://depot.galaxyproject.org/singularity/python:3.8.3' :
|
|
'quay.io/biocontainers/python:3.8.3' }"
|
|
|
|
input:
|
|
path samplesheet
|
|
|
|
output:
|
|
path '*.csv' , emit: csv
|
|
path "versions.yml", emit: versions
|
|
|
|
script: // This script is bundled with the pipeline, in nf-core/taxprofiler/bin/
|
|
"""
|
|
check_samplesheet.py \\
|
|
$samplesheet \\
|
|
samplesheet.valid.csv
|
|
|
|
cat <<-END_VERSIONS > versions.yml
|
|
"${task.process}":
|
|
python: \$(python --version | sed 's/Python //g')
|
|
END_VERSIONS
|
|
"""
|
|
}
|