21 lines
948 B
YAML
21 lines
948 B
YAML
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image: nfcore/gitpod:latest
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tasks:
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- name: Update Nextflow and setup pre-commit
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command: |
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pre-commit install --install-hooks
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nextflow self-update
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- name: unset JAVA_TOOL_OPTIONS
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command: |
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unset JAVA_TOOL_OPTIONS
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vscode:
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extensions: # based on nf-core.nf-core-extensionpack
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- esbenp.prettier-vscode # Markdown/CommonMark linting and style checking for Visual Studio Code
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- EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files
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- Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar
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- mechatroner.rainbow-csv # Highlight columns in csv files in different colors
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# - nextflow.nextflow # Nextflow syntax highlighting
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- oderwat.indent-rainbow # Highlight indentation level
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- streetsidesoftware.code-spell-checker # Spelling checker for source code
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- charliermarsh.ruff # Code linter Ruff
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