nextflow_process {

    name "Test Process MULTIQC"
    script "../main.nf"
    process "MULTIQC"

    tag "modules"
    tag "modules_nfcore"
    tag "multiqc"

    test("sarscov2 single-end [fastqc]") {

        when {
            process {
                """
                input[0] = Channel.of(file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fastqc/test_fastqc.zip', checkIfExists: true))
                input[1] = []
                input[2] = []
                input[3] = []
                """
            }
        }

        then {
            assertAll(
                { assert process.success },
                { assert process.out.report[0] ==~ ".*/multiqc_report.html" },
                { assert process.out.data[0] ==~ ".*/multiqc_data" },
                { assert snapshot(process.out.versions).match("multiqc_versions_single") }
            )
        }

    }

    test("sarscov2 single-end [fastqc] [config]") {

        when {
            process {
                """
                input[0] = Channel.of(file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fastqc/test_fastqc.zip', checkIfExists: true))
                input[1] = Channel.of(file("https://github.com/nf-core/tools/raw/dev/nf_core/pipeline-template/assets/multiqc_config.yml", checkIfExists: true))
                input[2] = []
                input[3] = []
                """
            }
        }

        then {
            assertAll(
                { assert process.success },
                { assert process.out.report[0] ==~ ".*/multiqc_report.html" },
                { assert process.out.data[0] ==~ ".*/multiqc_data" },
                { assert snapshot(process.out.versions).match("multiqc_versions_config") }
            )
        }
    }

    test("sarscov2 single-end [fastqc] - stub") {

        options "-stub"

        when {
            process {
                """
                input[0] = Channel.of(file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fastqc/test_fastqc.zip', checkIfExists: true))
                input[1] = []
                input[2] = []
                input[3] = []
                """
            }
        }

        then {
            assertAll(
                { assert process.success },
                { assert snapshot(process.out.report.collect { file(it).getName() } +
                                process.out.data.collect { file(it).getName() } +
                                process.out.plots.collect { file(it).getName() } +
                                process.out.versions ).match("multiqc_stub") }
            )
        }

    }
}