81 commits

Author	SHA1	Message	Date
Thomas A. Christensen II	91c3acc85e	Add equality function for Variant	2022-12-17 22:02:15 +00:00
Thomas A. Christensen II	3b33c85d00	Add type parameterization to variations getter ... I have encountered some cases where having a non-parameterized vector can crash a downstream process. I don't yet know how to make a MWE of that, but adding type parameters fixes my problem, and doesn't break any tests here.	2022-11-22 17:55:41 +00:00
Thomas A. Christensen II	f7278bd7d7	Remove unused AminoAcidSeq reference	2022-10-04 11:41:42 -05:00
Thomas A. Christensen II	1bbb85153c	Add constructor for Variant based on Variations ... A Variant is a collection of Variations, right? Unfortunately there was no way to convert a collection of Variations into a Variant, so I added one.	2022-07-21 12:33:35 +00:00
Thomas A. Christensen II	b8e44c7b81	Add public alternate base getter for Variation	2022-07-13 16:49:59 -05:00
Thomas A. Christensen II	cab314ec0b	Add public reference base getter for Variation	2022-07-13 16:49:58 -05:00
Thomas A. Christensen II	ccbe6eed62	Add private alternate base getter for Insertion	2022-07-13 16:49:57 -05:00
Thomas A. Christensen II	1b7c7f86d7	Add private reference base getter for Insertion	2022-07-13 16:49:56 -05:00
Thomas A. Christensen II	145e9e5f88	Add private alternate base getter for Deletion	2022-07-13 16:49:56 -05:00
Thomas A. Christensen II	bc073eaf20	Add private reference base getter for Deletion	2022-07-13 16:49:55 -05:00
Thomas A. Christensen II	c1f47c7b22	Add private alternate base getter for Substitution	2022-07-13 16:49:54 -05:00
Thomas A. Christensen II	73c2c2764f	Add private reference base getter for Substitution	2022-07-13 16:49:53 -05:00
Thomas A. Christensen II	a80ff869ce	Fix reference(::Variation) ... `reference(::Variation)` used the wrong field name. Fix that so I can use it downstream.	2022-07-13 16:49:52 -05:00
Thomas A. Christensen II	6d7a93604a	Add function to get variations from variant	2022-07-05 09:10:01 -05:00
Thomas A. Christensen II	dbdc575d75	Add accessor functions for Variant	2022-07-05 09:10:00 -05:00
Thomas A. Christensen II	89cad0120f	Add rightposition functions	2022-07-05 09:09:53 -05:00
Thomas A. Christensen II	fe1bbcc0f3	Add hash function for Variation	2022-06-30 16:48:37 -05:00
Thomas A. Christensen II	70965732cf	Add equality function for Variation	2022-06-30 16:48:24 -05:00
Thomas A. Christensen II	2d05b233a9	Add accessor functions for Variation properties	2022-06-14 16:24:05 -05:00
Thomas A. Christensen II	1e6f6ea075	Add accessor functions for Edit properties	2022-06-14 16:17:16 -05:00
Thomas A. Christensen II	76d5b6059e	Add Variation constructor based on edit parsing	2022-06-14 14:48:39 -05:00
Thomas A. Christensen II	ade9b7e41d	Fix inconsistent Variation positions (#4) ... * Change Variant constructor to use alignment positions Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com> * Add test for positions of Variations Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>	2022-05-06 12:26:49 +02:00
Thomas A. Christensen II	d0f0f65d7f	Fix show function for Variations with Insertion edits (#3) ... Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>	2022-05-06 12:25:07 +02:00
Jakob Nybo Nissen	92a2d40553	Implement translate	2022-01-26 14:59:19 +01:00
Jakob Nybo Nissen	8024d50889	More stuff	2021-09-15 13:33:37 +02:00
Jakob Nybo Nissen	87277268f6	Full rewrite	2021-08-24 16:30:11 +02:00
Jakob Nybo Nissen	642658f592	Add parsing	2021-03-02 17:55:17 +01:00
Jakob Nybo Nissen	354f18e0e4	Switch to SumTypes	2021-03-02 15:50:37 +01:00
Jakob Nybo Nissen	40749eb6f5	Start fixing	2021-03-02 13:20:25 +01:00
Jakob Nybo Nissen	64ae3bc862	Rewrite	2020-10-20 15:26:27 +02:00
Jakob Nybo Nissen	ad3fe4303f	Initial commit	2020-10-01 17:03:01 +02:00