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SequenceVariation.jl
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20 Commits (master)

Author SHA1 Message Date
Thomas A. Christensen II 7bd39b1d54 Add tests for _is_valid(::Haplotype) 1 year ago
Thomas A. Christensen II 2a5a5389ec Add tests for _is_valid(::Haplotype) 1 year ago
Thomas A. Christensen II 6a4a39c859 Add tests for `translate(::Haplotype)` 1 year ago
Thomas A. Christensen II 239b366a1c Add tests for `translate(::Variation)` 1 year ago
Thomas A. Christensen II c360caf9bd Add tests for Variation sorting 1 year ago
Thomas A. Christensen II 6119368af3 Add tests for Edit sorting 1 year ago
Thomas A. Christensen II b870007826 Add test for reconstruct function 1 year ago
Thomas A. Christensen II 5839de3ce1 Rename `Variant` type to `Haplotype` 1 year ago
Thomas A. Christensen II d29764d2bc Apply Blue style to tests file 1 year ago
Thomas A. Christensen II cb53defe9a Add Aqua tests 1 year ago
Thomas A. Christensen II f9e76d60d6 Add test for ending substitutions being invalid 1 year ago
Thomas A. Christensen II 3b61ccefb5 Add test for ending insertion 1 year ago
Thomas A. Christensen II abff6692d4 Add test for combined clips 1 year ago
Thomas A. Christensen II dd00231840 Add test for soft clips 1 year ago
Thomas A. Christensen II 1bbb85153c Add constructor for Variant based on Variations 
A Variant is a collection of Variations, right? Unfortunately there was no
way to convert a collection of Variations into a Variant, so I added one.
 2 years ago
Thomas A. Christensen II 97e1d193a6
Add VCF spec tests for reference and alternate bases 2 years ago
Thomas A. Christensen II 36cbd5abb9
Add tests for variations function 2 years ago
Thomas A. Christensen II 6bc1528d18
Add tests for Variation parsing 2 years ago
Thomas A. Christensen II ade9b7e41d
Fix inconsistent Variation positions (#4) 
* Change Variant constructor to use alignment positions

Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>

* Add test for positions of Variations

Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2 years ago
Jakob Nybo Nissen 92a2d40553 Implement translate 2 years ago