millironx/SequenceVariation.jl
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Author SHA1 Message Date
Thomas A. Christensen II
145e9e5f88
Add private alternate base getter for Deletion 2022-07-13 16:49:56 -05:00
Thomas A. Christensen II
bc073eaf20
Add private reference base getter for Deletion 2022-07-13 16:49:55 -05:00
Thomas A. Christensen II
c1f47c7b22
Add private alternate base getter for Substitution 2022-07-13 16:49:54 -05:00
Thomas A. Christensen II
73c2c2764f
Add private reference base getter for Substitution 2022-07-13 16:49:53 -05:00
Thomas A. Christensen II
a80ff869ce
Fix reference(::Variation) 
`reference(::Variation)` used the wrong field name. Fix that so I can use
it downstream.
 2022-07-13 16:49:52 -05:00
Thomas A. Christensen II
ece50c1ee9
Remove 32-bit arches from unit testing CI workflow 
32-bit is causing problems in an upstream package, and I'm not sure why, so remove it for now.
 2022-07-11 19:07:07 +00:00
Thomas A. Christensen II
467fa4d261
Fix iterator error in API auto-documentation 2022-07-11 19:04:20 +00:00
Thomas A. Christensen II
1c9511310f
Update Documentation CI workflow to use julia-actions workflows 2022-07-11 18:57:48 +00:00
Thomas A. Christensen II
9920ad2517
Update CI Unit Tests job name to match parameters matrix 2022-07-11 18:47:40 +00:00
Thomas A. Christensen II
03a4eb392d
Update CI Unit Tests job name to match parameters matrix 2022-07-11 18:39:55 +00:00
Thomas A. Christensen II
976d5b3a3d
Merge pull request #12 from MillironX/registration-prep 
Prepare for package registration
 2022-07-11 18:29:34 +00:00
Thomas A. Christensen II
2ccc2551f5
Add README 2022-07-11 13:25:30 -05:00
Thomas A. Christensen II
60cf5c1b0a
Add a changelog 2022-07-11 13:25:29 -05:00
Thomas A. Christensen II
e8bb2f6f8e
Add license 2022-07-11 13:25:28 -05:00
Thomas A. Christensen II
f7f9e3190c
Add compat section for all dependencies to Project.toml 2022-07-11 13:25:22 -05:00
Thomas A. Christensen II
a461152e55
Add Thomas Christensen as author in Project.toml 2022-07-11 13:24:38 -05:00
Thomas A. Christensen II
3d03740741
Update documentation 2022-07-11 13:22:55 -05:00
Thomas A. Christensen II
4ef7ba4450
Run DocumenterTools.generate() 2022-07-11 13:22:54 -05:00
Thomas A. Christensen II
39f3de83ad
Add pull request template 2022-07-11 13:22:53 -05:00
Thomas A. Christensen II
15420d4f52
Add feature request template 2022-07-11 13:22:52 -05:00
Thomas A. Christensen II
e4300d020a
Add bug report template 2022-07-11 13:22:50 -05:00
Thomas A. Christensen II
72611659f1
Install JuliaRegistrator 2022-07-11 13:22:49 -05:00
Thomas A. Christensen II
23f75aad22
Add CompatHelper workflow 2022-07-11 13:22:47 -05:00
Thomas A. Christensen II
6e2eab42c7
Add unit testing workflow 2022-07-11 13:22:45 -05:00
Thomas A. Christensen II
c5b28e282f
Add TagBot workflow 2022-07-11 13:10:35 -05:00
Thomas A. Christensen II
48470028ca
Add documentation workflow 2022-07-05 09:29:51 -05:00
Thomas A. Christensen II
a1f55d1c70
Add Julia gitignore 2022-07-05 09:19:06 -05:00
Thomas A. Christensen II
d9cd1fb33f
Remove Manifest.toml 2022-07-05 09:17:50 -05:00
Thomas A. Christensen II
e79968c4ec
Merge pull request #11 from MillironX/feature/variations-from-variant 2022-07-05 09:16:03 -05:00
Thomas A. Christensen II
36cbd5abb9
Add tests for variations function 2022-07-05 09:10:02 -05:00
Thomas A. Christensen II
6d7a93604a
Add function to get variations from variant 2022-07-05 09:10:01 -05:00
Thomas A. Christensen II
dbdc575d75
Add accessor functions for Variant 2022-07-05 09:10:00 -05:00
Thomas A. Christensen II
89cad0120f
Add rightposition functions 2022-07-05 09:09:53 -05:00
Thomas A. Christensen II
538b612faf
Merge pull request #10 from MillironX/feature/variation-equality 2022-06-30 17:04:01 -05:00
Thomas A. Christensen II
fe1bbcc0f3
Add hash function for Variation 2022-06-30 16:48:37 -05:00
Thomas A. Christensen II
70965732cf
Add equality function for Variation 2022-06-30 16:48:24 -05:00
Thomas A. Christensen II
5f7d5e59a1
Merge pull request #9 from MillironX/feature/variations-parse 2022-06-30 16:22:20 -05:00
Thomas A. Christensen II
6bc1528d18
Add tests for Variation parsing 2022-06-14 16:24:55 -05:00
Thomas A. Christensen II
2d05b233a9
Add accessor functions for Variation properties 2022-06-14 16:24:05 -05:00
Thomas A. Christensen II
1e6f6ea075
Add accessor functions for Edit properties 2022-06-14 16:17:16 -05:00
Thomas A. Christensen II
101f401635
Add BioGenerics dependency 2022-06-14 16:15:04 -05:00
Thomas A. Christensen II
9967ff4df2
Add test dependencies to project file 2022-06-14 15:36:58 -05:00
Thomas A. Christensen II
76d5b6059e
Add Variation constructor based on edit parsing 2022-06-14 14:48:39 -05:00
Thomas A. Christensen II
ade9b7e41d
Fix inconsistent Variation positions (#4) 
* Change Variant constructor to use alignment positions

Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>

* Add test for positions of Variations

Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2022-05-06 12:26:49 +02:00
Thomas A. Christensen II
d0f0f65d7f
Fix show function for Variations with Insertion edits (#3) 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2022-05-06 12:25:07 +02:00
Jakob Nybo Nissen
92a2d40553 Implement translate 2022-01-26 14:59:19 +01:00
Jakob Nybo Nissen
8024d50889 More stuff 2021-09-15 13:33:37 +02:00
Jakob Nybo Nissen
87277268f6 Full rewrite 2021-08-24 16:30:11 +02:00
Jakob Nybo Nissen
642658f592 Add parsing 2021-03-02 17:55:17 +01:00
Jakob Nybo Nissen
354f18e0e4 Switch to SumTypes 2021-03-02 15:50:37 +01:00