millironx/SequenceVariation.jl
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Author SHA1 Message Date
Thomas A. Christensen II
91c3acc85e Add equality function for Variant 2022-12-17 22:02:15 +00:00
Thomas A. Christensen II
f9e76d60d6 Add test for ending substitutions being invalid 2022-12-17 22:02:15 +00:00
Thomas A. Christensen II
3b61ccefb5 Add test for ending insertion 2022-12-17 22:02:15 +00:00
Thomas A. Christensen II
abff6692d4 Add test for combined clips 2022-12-17 22:02:15 +00:00
Thomas A. Christensen II
dd00231840 Add test for soft clips 2022-12-17 22:02:15 +00:00
Thomas A. Christensen II
b45081a56e Update CHANGELOG for v0.1.3 2022-11-22 18:07:53 +00:00
Thomas A. Christensen II
00495d4e14 Bump version number in Project.toml 2022-11-22 18:07:53 +00:00
Thomas A. Christensen II
3ed27f0c4e Update CHANGELOG 2022-11-22 17:55:41 +00:00
Thomas A. Christensen II
3b33c85d00 Add type parameterization to variations getter 
I have encountered some cases where having a non-parameterized vector can
crash a downstream process. I don't yet know how to make a MWE of that, but
adding type parameters fixes my problem, and doesn't break any tests here.
 2022-11-22 17:55:41 +00:00
Thomas A. Christensen II
752b482a0b Update CHANGELOG for v0.1.2 2022-10-04 11:55:58 -05:00
Thomas A. Christensen II
4de936cc83 Update project version number to v0.1.2 2022-10-04 11:55:58 -05:00
Thomas A. Christensen II
780a5add8a Update CHANGELOG 2022-10-04 11:41:42 -05:00
Thomas A. Christensen II
b20d603f95 Add ranged dependency compats 2022-10-04 11:41:42 -05:00
Thomas A. Christensen II
f7278bd7d7 Remove unused AminoAcidSeq reference 2022-10-04 11:41:42 -05:00
Thomas A. Christensen II
c945dc63dd
Release v0.1.1 (#19) 2022-07-21 12:59:47 +00:00
Thomas A. Christensen II
1bbb85153c Add constructor for Variant based on Variations 
A Variant is a collection of Variations, right? Unfortunately there was no
way to convert a collection of Variations into a Variant, so I added one.
 2022-07-21 12:33:35 +00:00
Thomas A. Christensen II
6a77d6d589
Merge pull request #16 from MillironX/feature/getbases 2022-07-14 15:00:10 +00:00
Thomas A. Christensen II
1cfe128070
Update CHANGELOG 2022-07-13 16:52:11 -05:00
Thomas A. Christensen II
97e1d193a6
Add VCF spec tests for reference and alternate bases 2022-07-13 16:50:00 -05:00
Thomas A. Christensen II
b8e44c7b81
Add public alternate base getter for Variation 2022-07-13 16:49:59 -05:00
Thomas A. Christensen II
cab314ec0b
Add public reference base getter for Variation 2022-07-13 16:49:58 -05:00
Thomas A. Christensen II
ccbe6eed62
Add private alternate base getter for Insertion 2022-07-13 16:49:57 -05:00
Thomas A. Christensen II
1b7c7f86d7
Add private reference base getter for Insertion 2022-07-13 16:49:56 -05:00
Thomas A. Christensen II
145e9e5f88
Add private alternate base getter for Deletion 2022-07-13 16:49:56 -05:00
Thomas A. Christensen II
bc073eaf20
Add private reference base getter for Deletion 2022-07-13 16:49:55 -05:00
Thomas A. Christensen II
c1f47c7b22
Add private alternate base getter for Substitution 2022-07-13 16:49:54 -05:00
Thomas A. Christensen II
73c2c2764f
Add private reference base getter for Substitution 2022-07-13 16:49:53 -05:00
Thomas A. Christensen II
a80ff869ce
Fix reference(::Variation) 
`reference(::Variation)` used the wrong field name. Fix that so I can use
it downstream.
 2022-07-13 16:49:52 -05:00
Thomas A. Christensen II
ece50c1ee9
Remove 32-bit arches from unit testing CI workflow 
32-bit is causing problems in an upstream package, and I'm not sure why, so remove it for now.
 2022-07-11 19:07:07 +00:00
Thomas A. Christensen II
467fa4d261
Fix iterator error in API auto-documentation 2022-07-11 19:04:20 +00:00
Thomas A. Christensen II
1c9511310f
Update Documentation CI workflow to use julia-actions workflows 2022-07-11 18:57:48 +00:00
Thomas A. Christensen II
9920ad2517
Update CI Unit Tests job name to match parameters matrix 2022-07-11 18:47:40 +00:00
Thomas A. Christensen II
03a4eb392d
Update CI Unit Tests job name to match parameters matrix 2022-07-11 18:39:55 +00:00
Thomas A. Christensen II
976d5b3a3d
Merge pull request #12 from MillironX/registration-prep 
Prepare for package registration
 2022-07-11 18:29:34 +00:00
Thomas A. Christensen II
2ccc2551f5
Add README 2022-07-11 13:25:30 -05:00
Thomas A. Christensen II
60cf5c1b0a
Add a changelog 2022-07-11 13:25:29 -05:00
Thomas A. Christensen II
e8bb2f6f8e
Add license 2022-07-11 13:25:28 -05:00
Thomas A. Christensen II
f7f9e3190c
Add compat section for all dependencies to Project.toml 2022-07-11 13:25:22 -05:00
Thomas A. Christensen II
a461152e55
Add Thomas Christensen as author in Project.toml 2022-07-11 13:24:38 -05:00
Thomas A. Christensen II
3d03740741
Update documentation 2022-07-11 13:22:55 -05:00
Thomas A. Christensen II
4ef7ba4450
Run DocumenterTools.generate() 2022-07-11 13:22:54 -05:00
Thomas A. Christensen II
39f3de83ad
Add pull request template 2022-07-11 13:22:53 -05:00
Thomas A. Christensen II
15420d4f52
Add feature request template 2022-07-11 13:22:52 -05:00
Thomas A. Christensen II
e4300d020a
Add bug report template 2022-07-11 13:22:50 -05:00
Thomas A. Christensen II
72611659f1
Install JuliaRegistrator 2022-07-11 13:22:49 -05:00
Thomas A. Christensen II
23f75aad22
Add CompatHelper workflow 2022-07-11 13:22:47 -05:00
Thomas A. Christensen II
6e2eab42c7
Add unit testing workflow 2022-07-11 13:22:45 -05:00
Thomas A. Christensen II
c5b28e282f
Add TagBot workflow 2022-07-11 13:10:35 -05:00
Thomas A. Christensen II
48470028ca
Add documentation workflow 2022-07-05 09:29:51 -05:00
Thomas A. Christensen II
a1f55d1c70
Add Julia gitignore 2022-07-05 09:19:06 -05:00