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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

Unreleased

0.2.2 - 2023-01-28

Fixed

Haplotype validation (#36/#37)

0.2.1 - 2023-01-11

Added

translate functionality for Haplotypes (#31)
More informative errors when constructing invalid Haplotypes (#34)

0.2.0 - 2023-01-10

Added

Tutorial-type documentation (#28)
Base.isless implementation for Edit and Variation (#32)

Changed

Code now follows Blue style (#28)
💣 [BREAKING] Public and private API defined based on Blue style guidelines (#28)
💣 [BREAKING] Renamed type Variant to Haplotype (#20/#29)
💣 [BREAKING] Refactored reconstruct function to use Haplotype's reference sequence (#30)

Removed

Windows and MacOS CI tests (#28)

0.1.4 - 2022-12-17

Fixed

Soft clips at end of alignment causing invalid Variants (#25/#26)

0.1.3 - 2022-11-22

Changed

Variations getter now returns type-parameterized vector (#23)

0.1.2 - 2022-10-04

Changed

Updated dependency compats (#21)
- BioAlignments: 2 -> 2,3
- BioSequences: 2 -> 2,3
- BioSymbols: 4 -> 4,5

0.1.1 - 2022-07-21

Added

Constructor for Variant based on Variations (#18)

0.1.0 - 2022-07-14

Added

Mutation types (Substitution, Deletion, Insertion)
Variant type to store groups of mutations together
Variation type to store and compare individual mutations
reconstruct! function to build mutated sequences from Variants
Variant constructor to automatically detect mutations from a BioAlignments.PairwiseAlignment
Methods to get reference and alternate bases from a Variation