millironx/SequenceVariation.jl
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SequenceVariation.jl/CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

Unreleased

  • Changed

  • Updated dependency compats (#21)

    • BioAlignments: 2 -> 2,3
    • BioSequences: 2 -> 2,3
    • BioSymbols: 4 -> 4,5

0.1.1 - 2022-07-21

Added

  • Constructor for Variant based on Variations (#18)

0.1.0 - 2022-07-14

Added

  • Mutation types (Substitution, Deletion, Insertion)
  • Variant type to store groups of mutations together
  • Variation type to store and compare individual mutations
  • reconstruct! function to build mutated sequences from Variants
  • Variant constructor to automatically detect mutations from a BioAlignments.PairwiseAlignment
  • Methods to get reference and alternate bases from a Variation