SequenceVariation.jl/docs/src/api.md

CurrentModule = SequenceVariation
DocTestSetup = quote
    using SequenceVariation
end

API Reference

Edits

Substitution
Deletion
Insertion

Variants

Haplotype
reference(::Haplotype)
variations
reconstruct
translate(::Haplotype{S,T}, ::PairwiseAlignment{S,S}) where {S,T}

Variations

Variation
reference(::Variation)
mutation
translate(::Variation{S,T}, ::PairwiseAlignment{S,S}) where {S,T}
refbases
altbases

Private API

Edits

Edit
_mutation
_lendiff

Variants

_edits
_is_valid(::Haplotype)

Variations

_edit
_is_valid(::Variation)