mirror of
https://github.com/MillironX/SequenceVariation.jl.git
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53 lines
1.9 KiB
Markdown
53 lines
1.9 KiB
Markdown
# Changelog
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All notable changes to this project will be documented in this file.
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0)
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## [Unreleased]
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### [0.1.4] - 2022-12-17
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### Fixed
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- Soft clips at end of alignment causing invalid `Variant`s ([#25](https://github.com/BioJulia/SequenceVariation.jl/issues/25)/[#26](https://github.com/BioJulia/SequenceVariation.jl/pull/26))
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### [0.1.3] - 2022-11-22
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## Changed
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- Variations getter now returns type-parameterized vector ([#23](https://github.com/BioJulia/SequenceVariation.jl/pull/23))
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## [0.1.2] - 2022-10-04
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## Changed
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- Updated dependency compats ([#21](https://github.com/BioJulia/SequenceVariation.jl/pull/21))
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- BioAlignments: 2 -> 2,3
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- BioSequences: 2 -> 2,3
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- BioSymbols: 4 -> 4,5
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## [0.1.1] - 2022-07-21
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### Added
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- Constructor for `Variant` based on `Variation`s ([#18](https://github.com/BioJulia/SequenceVariation.jl/pull/18))
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## [0.1.0] - 2022-07-14
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### Added
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- Mutation types (`Substitution`, `Deletion`, `Insertion`)
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- `Variant` type to store groups of mutations together
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- `Variation` type to store and compare individual mutations
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- `reconstruct!` function to build mutated sequences from `Variant`s
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- `Variant` constructor to automatically detect mutations from a `BioAlignments.PairwiseAlignment`
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- Methods to get reference and alternate bases from a `Variation`
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[unreleased]: https://github.com/BioJulia/SequenceVariation.jl/compare/v0.1.4...HEAD
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[0.1.4]: https://github.com/BioJulia/SequenceVariation.jl/compare/v0.1.3...v0.1.4
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[0.1.3]: https://github.com/BioJulia/SequenceVariation.jl/compare/v0.1.2...v0.1.3
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[0.1.2]: https://github.com/BioJulia/SequenceVariation.jl/compare/v0.1.1...v0.1.2
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[0.1.1]: https://github.com/BioJulia/SequenceVariation.jl/compare/v0.1.0...v0.1.1
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[0.1.0]: https://github.com/BioJulia/SequenceVariation.jl/releases/tag/v0.1.0
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