20 Commits (develop)

Author	SHA1	Message	Date
Ciarán O'Mara	560a5cd8df	Check that EOF_BLOCK gets written	1 year ago
Ciarán O'Mara	8272cea71e	Merge pull request #56 from jonathanBieler/bam_index_method ... Added method for handling different bam index types.	2 years ago
Jonathan Bieler	93a6b60d26	added method for handling different bam index types	2 years ago
Thomas A. Christensen II	f7b9d9fa75	Update tests to use new AlignmentAnchor structure	2 years ago
Ciarán O'Mara	8424757cc2	Merge branch 'master' into develop ... # Conflicts: # Project.toml # test/runtests.jl	2 years ago
Ciarán O'Mara	99aa013c2b	Add tests for issue #31 ... Test for expected results as described in https://github.com/BioJulia/XAM.jl/issues/31.	2 years ago
Ciarán O’Mara	8f26bbf4a7	Tidy state machines and improve error messages ... Makes better use of the existing flow in [Automa.jl](b6997f7415/src/Stream.jl (L124-L127)).	3 years ago
Ciarán O’Mara	c56eb0851a	Update Continuous Integration workflows ... - Includes doctest in tests.	3 years ago
Ciarán O’Mara	5bd793bc5f	Merge branch 'master' into develop	3 years ago
Ciarán O’Mara	c423694f29	Cater for blank sam files	3 years ago
Jakob Nissen	b086fefbd5	Make BAM record layout match BAM specs	4 years ago
Ciarán O'Mara	433b8d14e8	Begin crosschecks	4 years ago
Ciarán O'Mara	0ac352f1d2	Isolate testsets	4 years ago
Ciarán O'Mara	5fa8c5bd2e	Tests for in-place-reading pattern	4 years ago
Ciarán O'Mara	f6846edfb1	Check header in roundtrip	4 years ago
Ciarán O'Mara	c4f3c4b0df	Migrate to BioGenerics ... Basic find and replace.	4 years ago
herbstk	6a33ac06a7	✅ Enhanced unit test for rightposition (#37) ... Added additional tests for SAM.Record and BAM.Record for `rightposition` (and implicitly `alignlength`).	4 years ago
Ciarán O'Mara	2df146b8fc	Use FormatSpecimens	4 years ago
Ciarán O'Mara	1a3c986152	Minimal code adjustments for working separation ... - Update to use GenomicFeatures v2. - BioAlignments v2. - BioSequences v2. - Indexes v0.1.	4 years ago
Ciarán O'Mara	7a56931b90	Naive code roundup	4 years ago